Brief survey on phytochemicals to prevent COVID-19

BackgroundThe recent pandemic by COVID-19 is a global threat to human health. The disease is caused by SARS-CoV-2 and the infection rate is increased more quickly than MERS and SARS as their rapid adaptation to varied climatic conditions through rapid mutations. It becomes more severe due to the lack of proper therapeutic drugs, insufficient diagnostic tool, scarcity of appropriate drug, life supporting medical facility and mostly lack of awareness. Therefore, preventive measure is one of the important strategies to control. In this context, herbal medicinal plants received a noticeable attention to treat COVID-19 in Indian subcontinent. Here, 44 Indian traditional plants have been discussed with their novel phytochemicals that prevent the novel corona virus. The basic of SARS-CoV-2, their common way of transmission including their effect on immune and nervous system have been discussed. We have analysed their mechanism of action against COVID-19 following in-silico analysis. Their probable mechanism and therapeutic approaches behind the activity of phytochemicals to stimulate immune response as well as inhibition of viral multiplication discussed rationally. Thus, mixtures of active secondary metabolites/phytochemicals are the only choice to prevent the disease in countries where vaccination will take long time due to overcrowded population density.     

Atomistic De-novo Inhibitor Generation-Guided Drug Repurposing for SARS-CoV-2 Spike Protein with Free-Energy Validation by Well-Tempered Metadynamics

Computational drug design is increasingly becoming important with new and unforeseen diseases like COVID-19. In this study, we present a new computational de novo drug design and repurposing method and applied it to find plausible drug candidates for the receptor binding domain (RBD) of SARS-CoV-2 (COVID-19). Our study comprises three steps: atom-by-atom generation of new molecules around a receptor, structural similarity mapping to existing approved and investigational drugs, and validation of their binding strengths to the viral spike proteins based on rigorous all-atom, explicit-water well-tempered metadynamics free energy calculations. By choosing the receptor binding domain of the viral spike protein, we showed that some of our new molecules and some of the repurposable drugs have stronger binding to RBD than hACE2. To validate our approach, we also calculated the free energy of hACE2 and RBD, and found it to be in an excellent agreement with experiments. These pool of drugs will allow strategic repurposing against COVID-19 for a particular prevailing conditions.     

Nonparaxial effects on the propagation and scattering of a polarized optical pulse

Propagation characteristics of a polarized optical solitary pulse are analyzed by taking into account the effect of nonparaxiality and mutual interaction. To start with, a pair of generalized nonlinear Schrodinger equations is deduced through an operator approach. Stationary solutions of such a system are then analyzed numerically through a boundary value problem in two stages, with and without the nonparaxial effect. In the second stage, the propagating form of the corresponding spatial soliton is studied by an extended split step algorithm ETDRK. The initial profile is considered to be both a one- and two-soliton solution, to visualize the event of scattering and fusion. From this data, we have computed the intensity, root mean square spectral width, and chirp of a single soliton as it propagates. In the case of the two-soliton solution, we observe that for source parameter values, the fusion is more favored than scattering. It is observed that nonparaxiality and the interaction between A(x) and A(y) tends to destroy the periodic behaviors of these parameters. Lastly, we have investigated the modulational instability of the system as function of frequency detuning and nonparaxiality. The form of the gain is discussed as a function of nonparaxiality.     

Theoretical modeling of Cu(II), Sr(II), Gd(III), U(VI) sorption from nuclear effluent on PHA resin with experimental validation

Journal of Radioanalytical and Nuclear Chemistry - The sorption capacity of an in–house synthesized novel resin Polyhydraxamic acid(PHA) towards Cu(II), Sr(II), Gd(III), U(VI) ions was...     

Metal‐like Ductility in Organic Plastic Crystals: Role of Molecular Shape and Dihydrogen Bonding Interactions in Aminoboranes

Ductility is a common phenomenon in many metals but is difficult to achieve in molecular crystals. Organic crystals bend plastically on one or two face‐specific directions but fracture when stressed in any other arbitrary directions. An exceptional metal‐like ductility and malleability in the isomorphous crystals of two globular molecules, BH₃NMe₃ and BF₃NMe₃, is reported, with characteristic tensile stretching, compression, twisting, and thinning. The mechanically deformed samples, which transition to lower symmetry phases, retain good long‐range order amenable to structure determination by single‐crystal X‐ray diffraction. Molecules in these high‐symmetry crystals interact through electrostatic forces (B^??N⁺) to form columnar structures with multiple slip planes and weak dispersive forces between columns. On the other hand, the limited number of facile slip planes and strong dihydrogen bonding in BH₃NHMe₂ negates ductility. Our study has implications for the design of soft ferroelectrics, solid electrolytes, barocalorics, and soft robotics.     

Performance of different normal dispersion fibers to generate triangular optical pulses

Optical and Quantum Electronics - The nonlinear scattering of two non-collinear Gaussian pulses with different central frequencies and lengths, incident on the periodic stacks of semiconductor...     

Fast Legendre spectral method for computing the perturbation of a gradient temperature field in an unbounded region due to the presence of two spheres

The temperature distribution around two spheres is considered when the main field has a constant gradient at infinity. Bispherical coordinates are used, together with a transformation of the dependent variable that leads to separation of variables. Then the solution can be sought in Legendre series with respect to one of the bispherical coordinates. An important element of the proposed work is the effective way to reduce an essentially 3D problem to a set of three 2D problems. The Legendre spectral method is shown to have an exponential convergence which is confirmed by the computations. The efficiency is so high that even for the hard cases of two closely situated spheres, an accuracy of 10^?10 is achieved with as few as 20 terms in the expansion. Solutions with both longitudinal and transverse gradients at infinity are obtained, and the contour lines of the temperature field are presented graphically. © 2009 Wiley Periodicals, Inc. Numer Methods Partial Differential Eq 2010